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Gastroenterology
Primary Care

Coeliac Disease

High EvidenceUpdated: 2025-12-22

On This Page

Red Flags

  • Refractory coeliac disease (not responding to strict GFD)
  • Unexplained weight loss despite GFD compliance
  • GI bleeding or perforation
  • Lymphoma (enteropathy-associated T-cell lymphoma)
  • Hyposplenism complications (sepsis risk)
  • Severe malnutrition
Overview

Coeliac Disease

1. Topic Overview

Summary

Coeliac disease is a chronic autoimmune enteropathy triggered by dietary gluten in genetically susceptible individuals (HLA-DQ2/DQ8). It causes inflammation and villous atrophy in the small intestine, leading to malabsorption. The condition affects approximately 1% of the population, though many cases remain undiagnosed. Symptoms range from classic diarrhoea and weight loss to atypical presentations including anaemia, fatigue, and osteoporosis. Diagnosis requires positive serology (tissue transglutaminase IgA) followed by duodenal biopsy. Treatment is a strict lifelong gluten-free diet.

Key Facts

  • Definition: Autoimmune enteropathy triggered by gluten in HLA-DQ2/DQ8-positive individuals
  • Prevalence: ~1% of population; many undiagnosed
  • Genetics: HLA-DQ2 (95%) or HLA-DQ8 (5%) required but not sufficient
  • Key Serology: tTG-IgA (first-line); remember to check total IgA
  • Biopsy: Villous atrophy + crypt hyperplasia + increased IELs (Marsh classification)
  • Treatment: Strict lifelong gluten-free diet (GFD)

Clinical Pearls

"Must Be Eating Gluten": Serology AND biopsy are only valid if the patient is currently eating gluten. Do NOT recommend a GFD before investigations are complete — this can cause false negatives and diagnostic difficulty.

IgA Deficiency Trap: 2-3% of coeliac patients have IgA deficiency. If total IgA is low, tTG-IgA will be falsely negative. Request IgG-based tests (tTG-IgG or DGP-IgG).

Think Beyond Gut: Many patients present with extraintestinal manifestations — unexplained iron deficiency anaemia, osteoporosis, elevated transaminases, or neurological symptoms — rather than classic GI symptoms.

Why This Matters Clinically

Coeliac disease is underdiagnosed because many patients have non-classic presentations. Untreated disease leads to serious complications including osteoporosis, infertility, and increased lymphoma risk. A correct diagnosis enables effective treatment with a gluten-free diet, improving quality of life and preventing complications.


2. Epidemiology

Incidence & Prevalence

  • Prevalence: ~1% worldwide (many undiagnosed)
  • Iceberg Phenomenon: Diagnosed:undiagnosed ratio approximately 1:5-7
  • Increasing Detection: Rising due to better awareness and testing
  • Global Variation: Higher in European and Middle Eastern populations

Demographics

FactorDetails
AgeCan present at any age; peaks in childhood and 40-60 years
SexFemale:Male 2-3:1
EthnicityMore common in European descent; uncommon in East Asia
At-Risk GroupsFirst-degree relatives (10x risk), Type 1 DM, Autoimmune thyroid, Down/Turner syndrome

Risk Factors

Genetic:

  • HLA-DQ2 (95% of patients)
  • HLA-DQ8 (5%)
  • 10% risk if first-degree relative affected

Associated Conditions:

ConditionPrevalence in Coeliac
Type 1 Diabetes8%
Autoimmune thyroiditis10-15%
IgA deficiency2-3%
Down syndrome5-12%
Turner syndrome2-5%
Dermatitis herpetiformis25% (skin manifestation of coeliac)

3. Pathophysiology

Mechanism

Step 1: Gluten Ingestion

  • Gluten proteins (gliadin) from wheat, barley, rye
  • Partially digested in intestine

Step 2: Epithelial Damage & Permeability

  • Gliadin peptides cross epithelium via paracellular or transcellular routes
  • Zonulin increases intestinal permeability

Step 3: Deamidation by tTG

  • Tissue transglutaminase deamidates gliadin
  • Creates negatively charged peptides

Step 4: Antigen Presentation

  • Modified peptides bind HLA-DQ2/DQ8 on APCs
  • Presented to CD4+ T-cells

Step 5: Immune Response

  • T-cell activation triggers inflammatory cascade
  • Cytokines (IFN-γ, IL-21) cause:
    • Villous atrophy
    • Crypt hyperplasia
    • Intraepithelial lymphocytosis
  • B-cells produce antibodies (anti-tTG, EMA)

Classification (Marsh)

GradeHistological ChangesClinical Significance
Marsh 0Normal mucosaRules out active coeliac
Marsh 1Increased IELs (>25/100) onlyNon-specific; can be coeliac
Marsh 2Increased IELs + crypt hyperplasiaSuggestive of coeliac
Marsh 3aPartial villous atrophyDefinite coeliac
Marsh 3bSubtotal villous atrophyDefinite coeliac
Marsh 3cTotal villous atrophyDefinite coeliac (severe)

4. Clinical Presentation

Symptoms

Classical GI Presentation:

Non-Classical/Atypical Presentation (More Common in Adults):

Silent Coeliac Disease:

Signs

Red Flags

[!CAUTION] Red Flags — Require urgent attention:

  • Refractory coeliac disease (persistent symptoms despite strict GFD >12 months)
  • Unexplained weight loss with compliance
  • GI bleeding, haematemesis, melaena
  • Abdominal mass or lymphadenopathy (lymphoma risk)
  • Persistent or worsening symptoms after initial improvement

Chronic diarrhoea (40-60%)
Common presentation.
Steatorrhoea (pale, floating, malodorous stools)
Common presentation.
Abdominal bloating and distension
Common presentation.
Abdominal pain
Common presentation.
Weight loss
Common presentation.
Failure to thrive (children)
Common presentation.
5. Clinical Examination

Structured Approach

General:

  • Nutritional status (BMI, muscle mass)
  • Signs of anaemia (pallor, tachycardia)
  • Dermatological examination

Abdominal Examination:

  • Distension
  • Tenderness
  • Masses (rare — suggests complication)

Special Tests

SignTechniqueSignificance
PallorConjunctivae, palmsAnaemia (iron, folate, B12 deficiency)
GlossitisSmooth, red tongueB12/iron deficiency
Angular stomatitisCracks at mouth cornersIron/B12 deficiency
ClubbingNail examinationChronic malabsorption
Dermatitis HerpetiformisElbows, knees, buttocks — vesiclesPathognomonic skin manifestation
OedemaPeripheralHypoalbuminaemia (severe)

6. Investigations

First-Line (Serological)

TestSensitivityNotes
tTG-IgA95-98%First-line; most commonly used
Total IgA—Must check — 2-3% IgA deficient
EMA-IgA95-98%Must check IgA level; positive = pathognomonic histology
DGP-IgG90%Use if IgA deficient

CRITICAL: Patient MUST be eating gluten for testing to be valid.

Laboratory Tests

TestPurpose
FBCAnaemia (microcytic or macrocytic)
Ferritin, Iron, TIBCIron deficiency common
Folate, B12Malabsorption
LFTsUnexplained transaminitis (5-10% of coeliac)
Calcium, Vitamin DBone health / osteomalacia
TFTsAssociated autoimmune thyroid disease

Imaging / Procedures

ModalityFindingsIndication
OGD + Duodenal BiopsyVillous atrophy (Marsh grading)Confirms diagnosis in serology-positive patients
DEXA ScanOsteopenia / OsteoporosisBaseline for all newly diagnosed
Small Bowel MRI/CTLymphoma, other complicationsIf red flags present

Diagnostic Criteria

NICE NG20 Guidance:

Diagnosis requires:

  1. Positive serology (tTG-IgA ± EMA-IgA) WHILE eating gluten
  2. Duodenal biopsy showing villous atrophy (Marsh 3)

Note: In children with very high tTG (>10x upper normal) + positive EMA + HLA-DQ2/DQ8 + symptoms, biopsy may be omitted (ESPGHAN criteria — not used in adults).


7. Management

Management Algorithm

CONFIRMED COELIAC DISEASE
              ↓
┌─────────────────────────────────────────────────────┐
│        GLUTEN-FREE DIET (Lifelong)                  │
│                                                     │
│ • Avoid wheat, barley, rye (and oats initially)     │
│ • Corn, rice, quinoa, potato are safe               │
│ • Pure oats can be reintroduced later for most      │
│ • Dietitian referral ESSENTIAL                      │
│ • Gluten intake must be <20ppm to be "gluten-free"  │
└─────────────────────────────────────────────────────┘
              ↓
┌─────────────────────────────────────────────────────┐
│        NUTRITIONAL SUPPORT                          │
│                                                     │
│ • Monitor and correct deficiencies:                 │
│   - Iron, folate, B12                               │
│   - Calcium, vitamin D                              │
│   - Zinc, copper (if symptomatic)                   │
│ • Consider supplements initially                    │
└─────────────────────────────────────────────────────┘
              ↓
┌─────────────────────────────────────────────────────┐
│        BONE HEALTH                                  │
│                                                     │
│ • DEXA scan at diagnosis (adults)                   │
│ • Calcium + vitamin D supplementation if indicated  │
│ • Repeat DEXA if osteopenia/osteoporosis detected   │
└─────────────────────────────────────────────────────┘
              ↓
┌─────────────────────────────────────────────────────┐
│        VACCINATION                                  │
│                                                     │
│ • Pneumococcal vaccine (hyposplenism)               │
│ • Ensure up-to-date with all vaccines               │
└─────────────────────────────────────────────────────┘
              ↓
         MONITORING
              ↓
• Annual review (symptoms, dietary compliance, bloods)
• Repeat tTG-IgA (should normalise on GFD within 6-12 months)
• If persistent symptoms on strict GFD → investigate refractory coeliac

Conservative Management (Diet)

Gluten-Free Diet:

  • AVOID: Wheat, barley, rye
  • SAFE: Rice, corn, potato, quinoa, buckwheat, millet
  • OATS: Controversy — pure oats tolerated by most, but avoid initially
  • Cross-contamination: Important consideration
  • Prescribable items: Gluten-free bread, flour, pasta available on NHS prescription

Dietitian Referral:

  • Essential for all newly diagnosed patients
  • Education on reading labels
  • Avoiding cross-contamination
  • Maintaining balanced diet

Monitoring

  • Annual review: Symptoms, weight, adherence
  • Blood tests: FBC, ferritin, tTG-IgA (should normalise), LFTs, Ca, vit D
  • tTG normalisation: Usually within 6-12 months of strict GFD

Refractory Coeliac Disease

  • Defined as persistent symptoms despite strict GFD for >12 months
  • Confirm dietary compliance (dietitian review, inadvertent gluten)
  • Type 1: Normal IEL population — better prognosis
  • Type 2: Aberrant IEL clone — increased lymphoma risk
  • Refer to specialist centre

8. Complications

Nutritional

  • Iron deficiency anaemia (most common)
  • Folate and B12 deficiency
  • Vitamin D and calcium deficiency
  • Osteoporosis / osteomalacia

Malignancy

ComplicationRiskNotes
EATL (Enteropathy-Associated T-cell Lymphoma)6-10x increasedMost serious; associated with refractory Type 2
Small bowel adenocarcinomaIncreasedRare
Oesophageal/oropharyngeal SCCIncreasedSmall increase

Other

  • Hyposplenism: Functional; risk of encapsulated organism sepsis (pneumococcal vaccination)
  • Dermatitis herpetiformis: Skin manifestation; responds to GFD and dapsone
  • Subfertility / recurrent miscarriage: Improves with GFD
  • Neurological: Peripheral neuropathy, ataxia

9. Prognosis & Outcomes

Natural History

With strict adherence to a gluten-free diet, most patients achieve complete symptom resolution and mucosal healing. Untreated coeliac disease leads to progressive malnutrition and increased risk of serious complications including lymphoma.

Outcomes with Treatment

VariableOutcome
Symptom resolution70-80% within weeks-months
Mucosal healing60-80% within 2-5 years
Serology normalisationUsually within 6-12 months
Bone density improvementImproves with GFD + supplements
Lymphoma risk on GFDReturns toward general population

Prognostic Factors

Good Prognosis:

  • Strict dietary compliance
  • Younger age at diagnosis
  • Classic presentation (responds well to GFD)
  • Serology and histology normalise

Poor Prognosis:

  • Refractory coeliac disease (Type 2)
  • Older age at diagnosis
  • Severe malnutrition at presentation
  • Non-compliance with GFD

10. Evidence & Guidelines

Key Guidelines

  1. NICE NG20: Coeliac Disease (2015) — Comprehensive UK guidance on recognition, diagnosis, and management.

  2. BSG Guidelines (2014) — British Society of Gastroenterology guidance on testing, biopsy, and follow-up.

Landmark Studies

Ludvigsson et al. (2013) — Lancet

  • Large population-based study
  • Key finding: Coeliac disease associated with increased mortality, driven by malignancy
  • Clinical Impact: Emphasises importance of diagnosis and treatment

Leffler & Schuppan (2010) — Update on Coeliac Disease

  • Comprehensive review of pathophysiology and management
  • Clinical Impact: Established modern understanding of disease mechanism

Evidence Strength

InterventionLevelKey Evidence
tTG-IgA for diagnosis1aSystematic reviews, NICE
Gluten-free diet1aMultiple studies showing symptom resolution
DEXA screening2bCohort studies
Pneumococcal vaccination2bObservational (hyposplenism risk)

11. Patient/Layperson Explanation

What is Coeliac Disease?

Coeliac disease is a condition where your immune system reacts abnormally to gluten — a protein found in wheat, barley, and rye. When you eat gluten, your immune system attacks the lining of your small intestine, damaging it and making it difficult to absorb nutrients from food.

Why does it matter?

Without treatment, coeliac disease can cause serious problems:

  • Anaemia (low iron levels)
  • Weak bones (osteoporosis)
  • Tiredness and feeling unwell
  • Long-term, slightly increased risk of some cancers

The good news is that treatment is very effective. With a gluten-free diet, the gut heals and most people feel completely better.

How is it treated?

  1. Gluten-free diet for life: You need to completely avoid wheat, barley, and rye. This means avoiding most breads, pasta, cereals, cakes, and biscuits unless they're specifically gluten-free.

  2. Safe foods: Rice, potatoes, corn, quinoa, meat, fish, eggs, fruit, and vegetables are naturally gluten-free.

  3. Dietitian support: You'll be referred to a dietitian who will teach you how to read food labels and avoid hidden gluten.

  4. Supplements: You may need iron, vitamin D, or calcium supplements initially if you have deficiencies.

  5. Prescriptions: In the UK, you can get some gluten-free staples (bread, flour, pasta) on prescription.

What to expect

  • Symptoms often improve within weeks of starting a gluten-free diet
  • Complete gut healing can take 1-2 years
  • Annual blood tests and check-ups to make sure you're staying healthy
  • You'll need to follow the diet for life — even small amounts of gluten can cause damage

When to seek help

See a doctor if:

  • Symptoms don't improve on gluten-free diet
  • You're losing weight unexpectedly
  • You have new or worsening symptoms
  • You're struggling to follow the diet

12. References

Primary Guidelines

  1. National Institute for Health and Care Excellence. Coeliac disease: recognition, assessment and management (NG20). 2015. nice.org.uk/guidance/ng20

Key Studies

  1. Ludvigsson JF, Bai JC, Biagi F, et al. Diagnosis and management of adult coeliac disease: guidelines from the British Society of Gastroenterology. Gut. 2014;63(8):1210-1228. PMID: 24917550

  2. Ludvigsson JF, Montgomery SM, Ekbom A, Brandt L, Granath F. Small-intestinal histopathology and mortality risk in celiac disease. JAMA. 2009;302(11):1171-1178. PMID: 19755695

  3. Green PH, Cellier C. Celiac disease. N Engl J Med. 2007;357(17):1731-1743. PMID: 17960014

Further Resources

  • Coeliac UK: coeliac.org.uk
  • NICE CKS: cks.nice.org.uk


Medical Disclaimer: MedVellum content is for educational purposes and clinical reference. Clinical decisions should account for individual patient circumstances. Always consult appropriate guidelines and specialists for patient care.

Last updated: 2025-12-22

At a Glance

EvidenceHigh
Last Updated2025-12-22

Red Flags

  • Refractory coeliac disease (not responding to strict GFD)
  • Unexplained weight loss despite GFD compliance
  • GI bleeding or perforation
  • Lymphoma (enteropathy-associated T-cell lymphoma)
  • Hyposplenism complications (sepsis risk)
  • Severe malnutrition

Clinical Pearls

  • **IgA Deficiency Trap**: 2-3% of coeliac patients have IgA deficiency. If total IgA is low, tTG-IgA will be falsely negative. Request IgG-based tests (tTG-IgG or DGP-IgG).
  • **Red Flags** — Require urgent attention:
  • - Refractory coeliac disease (persistent symptoms despite strict GFD >12 months)
  • - Unexplained weight loss with compliance
  • - GI bleeding, haematemesis, melaena

Guidelines

  • NICE Guidelines
  • BTS Guidelines
  • RCUK Guidelines